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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … provides customized analysis, the JGI also participates in publication of results. …
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Community Science Program
… The Community Science Program (CSP) provides the scientific community at large with … sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … accepted proposals, sequencing, synthesis, metabolomics and analysis will be performed by the JGI at no cost to the user. …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of … in an obvious way. NIGEL MOUNCEY: We did a little bit of metagenome screening work and did find related clusters. But … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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IMG/M 4 version of the integrated metagenome comparative analysis system
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint … Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his … to unpack experimentally. But there’s a couple of different systems where people have made strides in that area. Where I …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint … of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … to have an index. You have to have the computer-searching systems. So one of the enabling technologies we wanted to do …
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IMG/M: the integrated metagenome data management and comparative analysis system
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IMG/M: integrated genome and metagenome comparative data analysis system
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated … global metagenomes (within IMG).  The Impact The initial analysis highlights abundances of gene annotations that … The work conducted by the US Department of Energy Joint Genome Institute ( …
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IMG/M: a data management and analysis system for metagenomes
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint … challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … on genome editing has focused on the seminal CRISPR-Cas9 system, which targets double-stranded DNA. The discovery of … proteins and were also found next to cas1 genes. Further analysis led to the identification of a new family of Cas …
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