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IMG/M: the integrated metagenome data management and comparative analysis system
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint … Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his … to unpack experimentally. But there’s a couple of different systems where people have made strides in that area. Where I …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint … of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … to have an index. You have to have the computer-searching systems. So one of the enabling technologies we wanted to do …
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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the DOE Office of Biological and Environmental Research (BER), a program within the DOE …
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IMG/M: a data management and analysis system for metagenomes
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The … J., Martin, J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, …
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A data analysis and coordination center for the human microbiome project
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Disclaimer
NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. …
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of … It is now available for both eukaryotic and microbial metagenome assemblies. It is also available as an app in …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , … data portal, which will include a database for comparative analysis of all the Human viruses. Kyrpides …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint … challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida … system, reached  Emiley Eloe-Fadrosh , who heads the  Metagenome Program . “After discussing the project with him, … metagenome assembly, and even an introduction to data analysis using the  IMG/M system . A Comprehensive Learning …
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