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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Finding the Fermenters
… including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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I-Min (Amy) Chen
… data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Natural Prodcast Episode 15: Katherine Duncan
… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … dish. I didn’t know what a thermocycler looked like. I was imagining some massive contraption for amplifying genes. I … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … spores from bay laurels can take hold, propagate, and ultimately penetrate the bark of oaks and threaten the health …
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Natural Prodcast Episode 16: Marcy Balunas
And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … we have to figure out their — it’s so much data. I cannot imagine. It’s, like, multifactorial all of the interactions …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … In part because of this evolutionary diversity, algal genomes can be incredibly complex and difficult to sequence …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … You want to talk about those problems? No, I mean, can you imagine your parent is now… When we think of our parents, … di-halogenation. And types of processes that one could imagine biocatalysts being developed from that would be …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to … 2012 to 2016, in Florida alone this disease caused an estimated $4 billion in losses. Currently, ninety percent of … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) …
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Disclaimer
… … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … including natural and agricultural soils, human- and animal-host associated, and ocean and other aquatic … catalog in his own research on how microbes respond to climate change. “With this dataset I can see where every …
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