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Community Science Program
… The Community Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Viral Genomics Group
… and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … have been assembled and reported from metagenomes, our understanding of the impacts of these viruses on microbiome …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the … fungi and algae to play a vital role in carbon cycling, biodegradation and biogeochemistry. This research helps …
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De novo Nanopore read quality improvement using deep learning
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Environmental Genomics Group
… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial …
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User Support
… the JGI will move to a new login service, requiring the use of an ORCID account with two-factor authentication enabled … science. DOE JGI Project Managers collaborate with users to develop project requirements, define the scope of work and … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … interesting? And what we found is there are a lot of small molecules that are active, that are also found in the … Episode Transcript … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Optimizing de novo genome assembly from PCR-amplified metagenomes
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … clusters. And then they sequenced a really nice and good assembly. They were able to assemble a really high quality … Episode Transcript … In this episode, Alison and I talk to Marnix Medema, from Wageningen …
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Metabolomics
… Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that influence system … functional genome annotation, improves understanding of the role small molecules play in diverse biological … Find more details on the instrumentation we use and our methodology …
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Natural Prodcast Episode 22: Alison Narayan
… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial Microbiology and … as a simple organic chemist, can I make that big, beautiful molecule? And so I’d like to think I’ve evolved a bit since … Episode Transcript …
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Natural Prodcast Episode 19: Bill Fenical
… DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … we want a chemist to study the ocean. And I didn’t find a single job advertisement. But one day, I decided to really …
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