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Natural Prodcast Episode 17: Cassandra Quave
… audience. The hardcover version is out now in stores and online, and there’s an audio version, read by Cassandra, and … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate Research … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … solution for production of high-quality fungal reference genomes, this program is an important initiative that …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and … offerings, including a description of the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In …
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The JGI Data Portal: Improving User Experience
… . Although the Data Portal is currently only accessible via Phytozome, the improvements it encompasses are more … resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief … Officer. JGI’s Portals, including Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers with …
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Natural Prodcast Episode 3: The Primer, Part 3
… information age and the ebook version is available at most online sellers. I think it’s as accessible as anything in … we can find more things. Turns out some of the early genomes that were sequenced for, say, Streptomyces – they … we’ve already sequenced. So, you know, I’ve got a large database of millions of different biosynthetic gene …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues … So we’ll run things in like little Eppendorf tubes, or in 96, or 384 well plates. But then the fun really starts when … I was a graduate student doing total synthesis where our gold standard was, if you’re doing three reactions a day, …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or online catalog, I guess. So we've also been able to get … in is actually seeing whether we could go into the genomes and predict what the natural product might actually …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … starts to go back up through the sediment it’ll get to this Goldilocks zone where there’s some oxygen available that has …
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Natural Prodcast Episode 7: Ben Shen
… well. One is to do DNA sequencing. So upon sequencing many genomes, now we don’t have to, as in the past, go randomly … Prize in the 1950s. So this really triggers the so-called golden age of antibiotic discovery in the 50s and 60s. And, … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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Natural Prodcast Episode 16: Marcy Balunas
… it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a pandemic so I’m no different than anyone else.  DAN: … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI … nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … sequences previously unrecognized within existing public databases and recovered more than 3,000 others from …
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Synthetic Biology Lab
… The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic … the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the …
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