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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … each step in the process. If you have any questions, please contact your Project Manager or … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger
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Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88
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The transcriptional activator ClrB is crucial for the degradation of soybean hulls and guar gum in Aspergillus niger
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved … from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of … value to improving our understanding of microbial ecology and metabolism by elucidating the functional …
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The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi
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Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species
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The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI … dataset of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of … The work conducted by the U.S. Department of Energy Joint Genome …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions …
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