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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to …
Learn more
Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to … The “Great Plate-Count Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed … of microbial metabolism towards a minority of cultivated bacteria, still persists to date. Research Team    …
Learn more
Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … this identification, metabolomics enables functional genome annotation, improves understanding of the role small … Find more details on the instrumentation we use and our methodology for …
Learn more
Natural Prodcast Episode 18: A CSP Primer
… DAN UDWARY: It’s been a while, but Natural Prodcast is back again for another round of … Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
Learn more
DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … Quarter Total Bases (Billions) Total Bases (Billions) by Platform Operating Hours* Goal  Actual Total*   Actual % …
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Frequently Asked Questions: Project Management
… Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: … Products & Offerings section of our website for more details, including a downloadable pdf of products categorized by Science Program.  …
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Natural Prodcast Episode 17: Cassandra Quave
… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … screening. I think a lot of our work has been focused on exploring the possibilities of bioinformatics and ways to …
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Natural Prodcast Episode 19: Bill Fenical
… episode for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor … DAN UDWARY: So Alison, I’m really excited today. We have, by far, I think, one of the most decorated and legendary … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … the Metabolomics Program is providing essential tools for exploring the molecular basis of complex biological systems, …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … to use it, it’s got to be surgically placed into your spine into your – intrathecally – and then you tune up the … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … interacting in the environment like, like my journey into exploring that world, I did feel like there are there is a … This is the first episode of Natural Prodcast, a podcast produced by the US Department of …
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