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Metabolic reprogramming by viruses in the sunlit and dark ocean
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Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics.
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The Expanding Universe of Methane Metabolisms in Archaea
… presence of methanogens in nearly all types of anaerobic environments suggest the diversity of methane metabolisms is … already contains metagenome datasets from a variety of environments, as well as tools for analysis. “There is … said. “Overall, these results show a striking case of how metabolic diversity can emerge from tinkering of a common …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… by capturing genomes of uncultivated giant viruses from environmental sequences across the globe, then using these … in the various ecosystems, their diversity, their predicted metabolic features and putative hosts,” noted study senior … the phylogenetic tree of giant viruses. Metabolic Reprogramming a Common Strategy for Large and Giant Viruses …
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Plant Program
… soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for … nodes. These families allow easy access to clade-specific orthology/paralogy relationships as well as … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Microbial Program
… interactions. These insights are crucial for addressing key environmental challenges, such as improving soil health, … large populations of bacteria and archaea in their natural environments using single cell approaches. This includes … organisms and how these interactions might influence their environment, we utilize single-cell sequencing of …
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Special Initiatives & Programs
… between Illinois’ Institute for Sustainability, Energy, and Environment (iSEE) and the Carl R. Woese Institute for … also has a major focus on sustainability, examining the environmental and socioeconomic implications of moving to a … Tanja Woyke, Deputy for User Programs . … Biological and Environmental Research Support Science … Strain Collection …
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JGI Portals
… nodes. These families allow easy access to clade-specific orthology/paralogy relationships as well as insights into clade-specific novelties and expansions.  … The SMC provides …
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Products
… features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence Assembly, annotation ( … community, such as a microcolony, microbial aggregate, or a specific subset of free-living cells. Extracted DNA may be … Draft Low-coverage short-read assembly & annotation of environmental DNA (no iTag sequencing) Assembly, annotation …
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Micro-Scale Applications Group
… internal analytical standards to accurately measure environmental microbiome activity levels.This functional … We also apply labeling strategies that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity (BONCAT+FACS). To provide additional …
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Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls
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Viral Genomics Group
… and evolutionary parameters driving virus:host dynamics in environmental microbial communities. This involves both … infections. The Viral Genomics Group is hosted within the Environmental Genomics group . Research Team … Coclet, C. … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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