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Natural Prodcast Episode 24: Jackie Winter and SMC
… data portal I’ve been working on with my colleagues Drew Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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FICUS-NERSC/KBASE
… ( NERSC ) is to accelerate scientific discovery at the DOE Office of Science through high performance computing … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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CSP Large Scale Call
… cycling, and biogeochemistry — questions of relevance to DOE’s Office of Biological and Environmental Research (BER) … that are listed in the call and leverage the diversity of JGI technical and analytical capabilities. All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data …
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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Partnerships Development Team
… was established in part to help better-connect industry to JGI resources, as well as target academic, governmental and … high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. … Office (IPO) and read the Guide to Partnering with DOE’s National Laboratories . … Recent Partnerships … The …
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User Support Analysis Group
User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse … to the development of automated analysis pipelines for standard sequencing products performed at scale. Our group …
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Viral Genomics Group
… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Natural Prodcast Episode 9: Roger Linington
… let me know! I’m dying to hear from you. Toss an email to  jgi[email protected] , or leave us a review on Apple Podcasts … to that here in North America. ALISON:  Yeah, and it does sound like your career has incorporated a lot of … of researchers in the field. And they were able to define standards for the minimum information that should be …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … KBase integrates a variety of data and analysis tools, from DOE and public resources, into an easy-to-use platform that …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  BER …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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