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Mission
… of Energy Office of Science user facility supported by the Biological and Environmental Research program, the … constitute the largest reservoir of biodiversity and functional versatility on Earth. Their activities and … are at the core of many environmental processes, and the genetic makeup of microbial species and communities forms …
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Enlarging Windows into Understanding Gene Functions
… sequencing or DAP-seq. The technology was developed by Ronan O’Malley , who leads the Sequencing Technologies … there is no shortage of fungal genomes anymore, but their functional interpretation is as tough as it has been 10 … he said. “We thought about reconstructing gene regulatory networks, understanding where transcription factors bind in …
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How to Submit Sequencing Samples
… process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … emails as raw sequence data becomes available, and as analysis is completed. You can view the status of your projects at any time by accessing various reports on the JGI Portal . Use the …
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Natural Prodcast Episode 22: Alison Narayan
… in the title of my talk, 100% fair for you to make that association. DAN UDWARY: So I guess what is the conceptual … in depth. So some of these that were initially identified by Russell Cox, like [INAUDIBLE]– DAN UDWARY: Explain to my … interesting. ALISON NARAYAN: It is a result that has a functional benefit for us, being chemists working with …
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Natural Prodcast Episode 18: A CSP Primer
Science Program , or CSP, which is the main mechanism by which users work with our facility to do science. Since I … to find info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Institutional User Agreements
… of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … execute a 2024 version .  The recent updates were approved by the DOE to address the DNA Synthesis program. When fully …
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Natural Prodcast Episode 20: Brian Bachmann
It was unpublished at that point. But people would push out gene clusters maybe once a month at most. Maybe twice a … just– and then in terms of there’s sequencing an organism by shotgun, which is what we did, we didn’t even sequence … ATP synthase.” On everninomicin biosynthesis: “EvdS6 is a bifunctional decarboxylase from the everninomicin gene …
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Natural Prodcast Episode 9: Roger Linington
Biodiversity Groups, and it’s this great program funded by the National Institutes of Health and the National … America brought to the UK? ROGER:  Yeah, it’s difficult to generalize, of course, but I felt overall that the British … of system-wide problems. And it’s not just constitutional analysis as a problem, we need corresponding improvements in …
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New Lineages of Life Group
… and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the …
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Strain Engineering
The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional exploration.  The developed strains represent an …
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Natural Prodcast Episode 8: Eric Schmidt
… hard it was – it felt kind of like training for a marathon by running at a high altitude! And a lot of us moved on to … it’s generally considered that it’s the bacteria living in association with macro-organisms that produce most secondary … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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