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… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … of, better understand fundamentally what’s going on in the cell as it responds to its ocean environment. And as we …

… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …

… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his … in putting antibiotics together, getting them out of the cell letting them do their dirty work. So that’s one arm. …

Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … (BGCs), advancing pathway analysis, optimization of cell- and cell free-based expression platforms, tools and …

… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development … seamlessly access and analyze data on scales ranging from single genes and individual genomes to metagenomes to …

Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences with the people behind the …

The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I … advancement in sort of both areas. And I suspect that no single change will resolve the problem. But that stepwise …

Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …

… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … been shown today is it's more a quorum sensing within a single species. DAN: Within a species. Genus? BETSY …

… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … and the bacteria and how the chemistry is going back and forth between them is part of what fascinates me about what … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …