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User Programs
For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for … and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status …
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Microbiome Data Science Team
… as well as the development of novel methods to enable large-scale comparative analysis, mining and visualization of big … S. et al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This … from drug discovery in every possible disease target area, using an enormous array of different isolation strategies … is likely to be in the environment? Can we use this broad-scale view of the chemistry in order to start to make …
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Disclaimer
NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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How to Submit Sequencing Samples
… is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … metadata to JGI database for shipping approval (n/a if using web-based form) All shipments originating outside the …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … the batch effect. Because they use different extraction methods and stuff like that. So we have a lot of data out …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most … the shrub willows through the  Community Science Program , using long-read sequencing to assemble the repetitive areas …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as … pioneering functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new … We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and … pipelines for standard sequencing products performed at scale. Our group also performs ‘proof-of principle’ research …
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