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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet … The Plant Program advances our understanding of plants’ biological and ecological roles to foster …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …
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Natural Prodcast Episode 17: Cassandra Quave
… Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … well when it comes to isolating compounds from these very complex mixtures, and in some cases, an isolated compound is …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … I talked about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, … was quite a nice example of collaboration as well– was the integration of the RODEO algorithm by the group of Doug …
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Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE
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Disclaimer
… resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by system or security personnel. … neither the United States Government nor the University of California nor any of their employees, makes any …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … double bonds in this one region of the molecule.  Dan: Big, complex molecule.  Brad: It was a complex chemical. Yeah, … a little bit more difficult. And so getting out clean DNA can also be a challenge there too. So JGI we really have …
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Partners
… our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support plant and other efforts. … Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National …
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Natural Prodcast Episode 22: Alison Narayan
… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … work as exploring and exploiting biocatalysts – that is, using enzymes to do chemical reactions. Obviously, in my … niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities …
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CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria
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Partnerships: Myco-Ed
… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques and data analyses compile … Beyond providing a scalable solution for production of high-quality fungal reference genomes, this program is an …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … to the community level. The Impact Rivers are transport systems, and their health is heavily reliant on the energy … for these datasets. As part of a larger microbiome data integration hub, these datasets are searchable from the …
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