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Seasonal activities of the phyllosphere microbiome of perennial crops
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Partners
The JGI leverages its existing partnerships and develops others providing complementary … our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA … DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … Viral Genomics Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of … and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps these …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … So we had a series of criteria to say this is a bunch of genetic material that exists in one copy, and it is … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … MARC: Well, I’m really biased and I like the bugs in the microbiome. So a lot of my work is as focused on insects As … really similar to like human crops like corn. There’s low genetic diversity in the crop. So they’re susceptible to …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to culture these … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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Probing the active fraction of soil microbiomes using BONCAT-FACS
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Diversity of active viral infections within the Sphagnum microbiome
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Strain Engineering
The focus of this group, in recent years, has been to bring generalizable … to bacteria, yeasts and algae previously with little to no genetic tools enabling heterologous expression and … The developed strains represent an additional phase of user-accessible project types, in which DNA-based …
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Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … configuration of electrons that becomes really reactive. And so, different types of enediyne molecules can … But today, you have so many other say morphological, genetic, you know say sugar, lipid composition – so I think …
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Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes
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