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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while … studies in the same system. With the right functional characterization, those genes could become dials for tuning …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … with a contract manufacturer to actually have them build a plant for production and fermentation and transfer that … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in … six carbon really want to rearrange into a six-membered aromatic ring. When they do that, they end up creating a …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … microorganisms, by sequencing large populations of bacteria and archaea in their natural environments using …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … help solve energy and environmental challenges.   Usually, plants have the upper hand against any kind of biomass … to provide tools beyond biomass breakdown, extending into biochemical production.    Over time, as these projects have …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … could be a reasonable number if you are talking about a plant and a microbe interacting very stably. So it makes … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from water to land. Key …
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Biochemical and structural characterization of enzymes in the 4-hydroxybenzoate catabolic pathway of lignin-degrading white-rot fungi
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing … crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … Benefits sharing in the US National Parks USDA Animal and Plant Health Inspection Service permits US Fish and Wildlife …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … related to clean energy generation and environmental characterization and cleanup. The JGI provides integrated …
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