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… where he is the PI of the Laboratory for Biosynthetic Studies. Brian and I are old friends and colleagues, having … went on to work at a groundbreaking company in the early 2000s called Ecopia, which was a very early genome mining … which includes screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and …

… screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of … with a contract manufacturer to actually have them build a plant for production and fermentation and transfer that … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The recent …

… the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. … Now, we didn’t get into secondary metabolites really in my studies. So this is, is an area that was adjacent to what I … ALISON: Hmm. It kind of – it’s kind of like I’m smelling bacterial perfume. I mean – but it’s purposeful so it’s some …

… training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The … workshop at the  2019 Association for Environmental Studies and Sciences (AESS) Conference in Orlando, Florida.  … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …

… who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University of Queensland in …

… the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …

And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … million BGCs in the database on the release, and that’s the bacterial stuff. Could be more. [CHUCKLES] I’m not quite …

… to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — … and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace … Genomes Online Database … Integrated Microbial Genomes and Microbiomes … Integrated Microbial Genomes — Plasmid …

… functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most efficient degraders of plant biomass. These abilities are crucial for sustainable … and integrate multi-omics tools to enhance functional studies. These efforts seek to improve understanding of how …

… ra-MOR-um) the genus in Latin translates to “plant destroyer” and it has served as just that on a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … and his colleagues have also launched OakSTeP, which facilitates the further cooperation between professional …