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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome … Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was …
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Natural Prodcast Episode 1: The Primer, Part 1
… the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. … Now, we didn’t get into secondary metabolites really in my studies. So this is, is an area that was adjacent to what I … ALISON: Hmm. It kind of – it’s kind of like I’m smelling bacterial perfume. I mean – but it’s purposeful so it’s some …
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Examples: Successful LOIs & Submissions
… Elucidating Sphagnum microbiome genetic interactions for improved growth at … to soil carbon storage during simulated range shifts of plant-fungal symbionts … the gene regulatory networks governing terpenoid-mediated plant environment interactions to enable advanced bioenergy …
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Natural Prodcast Episode 14: Nigel Mouncey
… screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of … with a contract manufacturer to actually have them build a plant for production and fermentation and transfer that … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Elucidating Bacterial Gene Functions in the Plant Microbiome
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Institutional User Agreements
… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The recent … must be in place.  This is in addition to an active 2024 User Agreement or JGI BDLUA. MATERIAL TRANSFER …
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Cataloging the Microbes that Manage the Health of River Systems
… and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can … University researchers led a consortium to study river microbiomes. To understand the microbiology of watershed … access points for these datasets. As part of a larger microbiome data integration hub, these datasets are …
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Game On: High School Students Drive Everglades Metagenomics Study
… training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The … workshop at the  2019 Association for Environmental Studies and Sciences (AESS) Conference in Orlando, Florida.  … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … million BGCs in the database on the release, and that’s the bacterial stuff. Could be more. [CHUCKLES] I’m not quite …
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A roadmap for equitable reuse of public microbiome data
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JGI Portals
… will be reused for further science.  Notice Effective July 27, 2026, the JGI will move to a new login service, requiring the … Download plant, algal, fungal and microbial genomes and metagenomes — … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes …
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Frequently Asked Questions: Project Management
… Phycocosm (citation: https://doi.org/10.1093/nar/gkaa898 ) Plants: Phytozome (citation: … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … work done by the JGI. More information is available in our Publications Policy on our Data Policy & Support page.  …
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