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Fungal & Algal Program
Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … allows for the identification of key functional traits that have direct applications in bioenergy production, carbon …
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Partnerships: Myco-Ed
… fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques … Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. Myco-Ed has:  … For consistency and to reduce teaching-lab costs, we have partnered with the Arizona Genomics Institute where …
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Secondary Metabolites Program
… focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which … for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … networks of secondary metabolite biosynthesis: We have developed Regulon Identification by in vitro-sequencing …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… … DAN: All right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. … Thursday of the month, just like I promised. Now I just have to make this whole “on-time thing” a habit! I’m really … about several different pieces of her work, including bacterial quorum sensing and its effects on regulation of …
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Metabolomics
… systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI … and environmental samples using advanced liquid chromatography mass spectrometry (LC-MS) based methods in … methods optimized for specific types of molecules.   … Find more details on the instrumentation we use and our …
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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and capabilities of … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the … are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of the … compounds. However, no microbe works alone. Archaea, bacteria, and viruses all operate in concert to form the …
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Products
… as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … that your request is appropriate for that call. Learn more about the  average base outputs for each product. For … in the JGI product catalog. As a result certain products have been  discontinued , including smRNA, bisulfite …
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Frequently Asked Questions: Project Management
… https://signon.jgi.doe.gov . This account can then be used to submit proposals, sample and project metadata, and to … in the past.  These protocols are not endorsed by and have not been validated by the JGI, but are provided as … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient … and the presence of methanogens in nearly all types of anaerobic environments suggest the diversity of methane … “Distribution of predominant high-temperature archaeal and bacterial lineages in Yellowstone National Park,” as well as …
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Special Initiatives & Programs
… . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the … to nominate their strains for sequencing, as long as they have a scientific question that is relevant to DOE … of Energy Bioenergy Research Centers.  The Centers are intended to accelerate basic research in the development of …
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DNA Synthesis Program
… a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the … collaboration with U.S. and international scientists to drive innovations that align with DOE's missions. … The … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …
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