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…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a … staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and collaboration with partner organizations such as the DOE Systems Biology …

… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … I think it must’ve been about 2001, maybe, and so it was before smartphones and before laptops and everything. And I … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …

… DAN UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for the … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … Episode Transcript …

… A new approach for improving functional annotation in fungal … proof-of-concept study, researchers demonstrated that a new genetic mapping strategy called RH-Seq can identify genes that … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of …

… Outreach at JGI takes many forms: We offer internship opportunities through working directly with specific universities, continuing education programs in … The JGI and UC Merced have had a long-standing internship partnership that started in the summer of 2014. …

… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed …

… Leveraging massive comparative genomics to decode millions of … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … completely unsampled. This creates a bottleneck: Without genetic blueprints from diverse fungi, researchers struggle …

… Multi-species assays yield an unprecedented view of plant evolution and … are activated to sustain life’s processes.  Traditionally, mapping this intricate network of regulatory “switches” in … where transcription factors (TFs) — the proteins that flip genetic switches — bind DNA were limited to a few model …

… DAN: You’re listening to the US. .Department of Energy Joint … Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his … really similar to like human crops like corn. There’s low genetic diversity in the crop. So they’re susceptible to …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … data portal Phytozome. The combination of field data and genetic information has allowed the research team to … the 4X variety was more of a specialist. The genetic variation that allows the 8X variety to be a generalist is a …

… DAN UDWARY: You’re listening to the Department of Energy … of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… By leveraging new tools and large-scale data mining, JGI researchers … fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science … due to features like self-splicing introns and multiple genetic codes. Adding to the challenge, mitochondrial …