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JGI@25: Using Team Science to Build Communities Around Data
… a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … on Phytozome  … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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Natural Prodcast Episode 22: Alison Narayan
… the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … so starting from some of the enzymes that we had the most data on and knew the most about, working with my …
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User Support
… work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation … Project Manager will facilitate project execution by: Metadata verification and coordination with IMG , GOLD and …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I … or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07T)
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single …
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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data …
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Who We Are
… staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our work at the …
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Secondary Metabolites Program
… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … cell- and cell free-based expression platforms, tools and data for deciphering regulatory networks, and refining … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, …
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … virus sequences vary widely. In a previous effort, an international consortium recommended specific …
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