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FICUS Overview
Previously, researchers had to apply to each facility with separate review schedules and selection processes, … fundamental science experiments in ways they couldn’t with projects undertaken separately at individual user … of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides …
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Natural Prodcast Episode 23: Aaron Puri
I really do want you all to hear this great conversation with Aaron Puri. He is an Assistant Professor from the … ecology community to be able to better predict how their microbes are interacting with each other from sequence … DAN: Almost like you know that there is. AARON PURI: It’s a planted question Dan. Yeah. So overall I think what we’re …
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Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat
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Cultivating Symbiotic Antarctic Microbes
The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental processes … of soil-sediment environments, water and air-atmosphere with the humans and the biosphere), including the global … Hrr. lacusprofundii for them. One of the most distinctive features of the Nanohaloarchaeota was discovered with …
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Genomic features of bacterial adaptation to plants
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New Lineages of Life Group
… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use … Microbiome. 5 (1), 1-6 Schulz et al. (2017) Giant viruses with an expanded complement of translation system … al. (2016) A Rickettsiales symbiont of amoebae with ancient features. Environmental Microbiology. 18 (8), 2326-2342 …
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Frequently Asked Questions: Project Management
… by your project manager in the initial correspondence with you if the User Agreement and Appendix are active and … be accessed via the Genome Portal , at the following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 … Phycocosm (citation: https://doi.org/10.1093/nar/gkaa898 ) Plants: Phytozome (citation: …
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IMG Group
… and exa- scales on multicore and many core architectures with the ultimate objective of facilitating omics-based … it has also become possible to identify speciation events within existing species. Within the JGI’s production pipeline, ANI is used to …
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JGI-UC Merced Interns Share Their 2021 Experiences
… interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, … this program’s history, two interns returned to re-engage with their mentors from the previous year and continue … Impact on Microbial Root … Cross Species Comparison of Plant Single-cell Transcriptomes of Rice and Arabidopsis …
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Prepublication data sharing
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DNA Synthesis Program
… been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and environmental … decomposition, CO2 fixation, redox reactions, and plant metabolite biosynthesis, synthesizing and … of fungi and community annotation. … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… come from livestock — specifically, from the methane-making microbes within their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and their rumen are highly capable of breaking …
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