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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … department at the University of Utah, so that makes him one of Jackie’s colleagues. Aaron is doing some cool stuff … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … him, I was working on the natural product dioxin ubiquinone, which actually comes from a marine bacterium. And so, I … in is actually seeing whether we could go into the genomes and predict what the natural product might actually …
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Natural Prodcast Episode 22: Alison Narayan
… … DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … So I would say we run enzymatic reactions anywhere from 4 degrees to room temperature, to slightly elevated. We …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … techniques and data analyses compile original data for improving fungal genomic resources empower students … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ …
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Natural Prodcast Episode 1: The Primer, Part 1
Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … in the field, you can probably skip straight on to Episodes 4 5 and 6, for some fun interviews, unless you want to fact … on, let me know! All right, so here we go. This is episode one of the Natural Prodcast Primer!  — DAN: Hey, Alison.  …
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Stop codon reassignments in the wild
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Natural Prodcast Episode 5: Brad Moore
… most of that out. But anyway, here’s our conversation with one of my favorite human beings, Brad Moore. — Dan: How do I … and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola . …
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The Power of One, Amplified
… approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … is akin to the structure of social media networks where one social media group may have a relatively constrained set …
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Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples … for the appropriate contact name, email address and phone number for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The recent …
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Secondary Metabolites Program
… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … and their roles in the environment, can unlock new avenues for bio-based products and bioenergy crop enhancement. The … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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Mission
… and resources. Our vision is to lead genomic innovation for a sustainable bioeconomy. ALL PROPOSALS must support the … DNA sequencing, informatics, and technology development pioneered at the U.S. DOE genome centers at Lawrence Berkeley … this information freely to the public databases. In 2004, the JGI established itself as a national user facility, …
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