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Environmental Genomics Group
Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, … Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6. Ladau, J. et al. (2019)  Spatial, Temporal, and … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 12: Nadine Ziemert
Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … We know each other I think– I consider us as something like scientific cousins. So we both went to Scripps [Institution … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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JGI Portals
Our data platforms are a key resource for the broader scientific community and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes … Genomes Online Database … Integrated Microbial Genomes and Microbiomes … Integrated Microbial Genomes — Plasmid …
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Metabolomics Program
… of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial … … EcoFABs:  For studying microbe-host (or plant-microbiome) interactions under controlled conditions, … recommend using the workflow in  GNPS2 .   … In support of user science, the JGI Metabolomics Platform delivers rich …
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Natural Prodcast Episode 11: Marnix Medema
… there is many. I would say, perhaps, half of or more of the users of antiSMASH are not in this field either. So they … we, for example, are really interested in metagenomes and microbiomes and figuring out which gene clusters are … think there is a lot of things that we can learn from that scientific community, and of course, hopefully they can …
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DNA Synthesis Program
… group, a team that develops data science tools, and a user science group. … The JGI has developed a suite of … tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to … & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … Inventory of Composable …
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Natural Prodcast Episode 4: Nancy Keller
… they deserve. They are so exciting. I get frustrated. Like microbiomes  – you know how that’s a big deal now. You go to all these meetings on microbiomes they only talk about the bacteria. … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You …
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Natural Prodcast Episode 16: Marcy Balunas
… the traditional sort of academic path or even just the scientific path of “I know exactly what I’m going to do and … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … on increasing computational skills among biologists JGI CSP Proposal: Metagenomic mining of natural product …
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Project Management Office
… to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of working with our … with: preparing a Statement of Work, completing a formal User Agreement, and ultimately launching the user’s project. …
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Natural Prodcast Episode 15: Katherine Duncan
Kate Duncan: Oh, goodness. I mean, if you were to find my scientific papers, that would be Katherine. Dan Udwary: … into University, so I guess I must’ve been around about 18. And I went to Marcel’s office. And he’s incredibly … of Energy Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National Lab. You …
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Approved Proposals
… previous fiscal years for our Community Science Program (CSP) as well as the Facilities Integrating Collaborations for User Science (FICUS) program.  …
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Products
… an extensive internal product audit to analyze the scientific value, demand, and costs of current offerings in … , including smRNA, bisulfite sequencing, and ChIP-seq. … Scientific Program Product Description Deliverables Cycle … Selected genomes will be improved based on feasibility and scientific merit Assembly, annotation ( Mycocosm ) 256/404 …
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