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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as … decades, the liverwort  M. polymorpha has been used as a model for evolutionary studies. Its place among … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of Energy Joint …
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Training the Next Generation of Talent
… with Wang and backed by both Meza and DOE JGI Director Eddy Rubin. “QSB faculty are active DOE JGI Community …
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JGI Announces 2026 New Investigator Portfolio
… call; the next deadline for proposal submission is Sept. 8, 2026, for inclusion in the October 2026 review. You can …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Laboratory (Berkeley Lab). The accepted proposals come from 80 full proposals, resulting from 95 letters of intent. For … poplar plant health, in part to learn how these species can modulate their behavior in the presence of other fungi. …
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Tracing the Evolution of Shiitake Mushrooms
… Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the Americas to trace the evolution … of Lentinula species.The Lentinula genus diverged roughly 28 million years ago, when the largest mammal … This research was supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … summer research experience at the JGI. On July 26, 2018, the JGI celebrated the culmination of the fifth summer of … Group who has mentored several of the students including 2018 intern Candace Cole, noted that “each year, they bring an …
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The Switchgrass Genome: Tools and Strategies
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… time, many species in a community may be in ‘low power mode’, where they do very little.  SIP experiments can show … chemical compound. By feeding a microbial community a modified version of a specific chemical, where ordinary … are swapped for the heavier, non-radioactive isotope Carbon-13, researchers can then safely follow the path of that …
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Natural Prodcast Episode 9: Roger Linington
… microbial natural products in an ordered way for perhaps 80 years. And in that time, we have discovered many … we’d done by hand, in order to build a machine learning model that would look at all of the data that’s in PubMed, … be true. People have studied chemistry-first projects for 80 years, from a huge array of different perspectives. …
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Draft Genome Sequences of Switchgrass Diazotrophs
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Nigel Mouncey
… Society for Industrial Microbiology and Biotechnology 13 granted patents, 33 pending. Includes: Enhancing spinosyn … oxygen binding proteins. (2014) U.S. Patent Application US8741603 Fermentative vitamin C production. (2012) U.S. Patent Application US8318462 Fermentation process. (2008) U.S. Patent Application US7344855 …
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Microbiome Data Science Team
… hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with important biotechnological … CRISPR-Cas types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of … dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of …
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