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Natural Prodcast Episode 17: Cassandra Quave
… Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week is Professor Cassandra Quave … these studies are lacking that. And so there’s no way to be 100% sure that the chemistry that they’re even reporting on … plants and bringing them back is not your jam, the good news is there’s this amazing resource that can be provided …
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Examples: Successful LOIs & Submissions
… CSP Large Scale Proposal #1 … CSP Large-Scale LOI #1 … FICUS Example #1 …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity and …
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 … v12 was first deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are … . Gene pages will also be forwarded (e.g.,  Gene Potri.006G034600 on v12 will be forwarded to  Gene Report:  …
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Data Ecosystem
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Webinar: SIP technologies at EMSL and JGI
… NanoSIMS, and other techniques. Q&A from the Webinar: 1. Q(uestion): How much DNA is required for the JGI SIP … future. 5. Q: How well-suited is the LA-IRMS for tracking N15? The example in the presentation was with C13.  A:  Yes, … quite have the spatial resolution at tens of microns or 100 microns, whatever you want to call it. But NanoSIMS can …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … 1. Swift CL, Louie KB, Bowen BP, Olson HM, Purvine SO, …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized …
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JGI Portals
… metagenomes, and metatranscriptomes. It features over 15 million viral genomes and fragments, enriched with … and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… technology, engineering and math (STEM) fields. At the 2016 CAMP Statewide Undergraduate Research Symposium , held … the 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint … to carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal … cell and metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… the JGI DNA Synthesis Science Program, which started in 2012, and what they’ve discovered through their … collaboration has been incredibly productive; more than 10 papers, including two Nature Plants publications, in five …
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