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Micro-Scale Applications Group
… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet technology in order … Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to accurately …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
… and postdoc at Lawrence Livermore National Laboratory, is using bioinformatics and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, … genomic information from plants, fungi, algae, non-medical microbes, microbial communities, and other relevant …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
… gases from Arctic permafrost. But to see what they’re doing, he first needs their DNA.   …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth … our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a changing … communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with …
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Deep-branching acetogens in serpentinized subsurface fluids of Oman
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … first publicly available, river-focused microbial resource that provides information at multiple scales from genes to … awards DEB1840243, EAR1836768 and DEB1457794. Funding support also was provided from Colorado State …
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Natural Prodcast Episode 22: Alison Narayan
… Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society … I hope she’ll accept this description, but I’d say that Alison is not one of the more normal kinds of natural … her work as exploring and exploiting biocatalysts – that is, using enzymes to do chemical reactions. Obviously, …
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A dynamic microbial sulfur cycle in a serpentinizing continental ophiolite
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … for Industrial Microbiology Natural Products conference that was held last January. Ben was the organizing chair of that conference, and he and the conveners put on a great … strain collection, and our collaborations to sequence that collection, mine genomes, and develop new technology to …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant … studying those microbial methane-makers. Eventually, that could help us dial back their emissions, while still …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal … report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform hydrogenotrophic … applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced …
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