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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against … also have industrial applications, including bioenergy. All plants make terpenoids, which carry out a diverse array of … the bioenergy crop switchgrass. The team confirmed just how important zealexins are to maize health. Infections with …
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How genomics can help unravel the evolution of endophytic fungi
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the … media. Following a Code of Conduct allows us to create the best experience possible for all attendees. Participants …
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Natural Prodcast Episode 18: A CSP Primer
… DAN UDWARY: It’s been a while, but Natural Prodcast is back … on from JGI to do real journalism, and we wish her all the best. Later on, I’ll introduce my new co-host, who I’m … listener, then you’ll recognize this material, though my show is a little more free-form, and this is the longer cut …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, isolate genes and more. The … Beyond providing a scalable solution for production of high-quality fungal …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists … Download plant, algal, fungal and microbial genomes and metagenomes — … GOLD is a web resource for comprehensive access to information regarding genome and metagenome …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically … for self-defense. But the compounds may also be involved in how the fungi metabolize plant biomass, which could inform how scientists can more easily convert plants into carbon-neutral biofuels . What’s more, many …
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Webinars on Offerings & Capabilities
… Below are a list of webinars that can help you through the submission process by … webinars here . You can find additional webinars covering how to use our data portals here.  …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley … user facilities. The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley Lab … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … ask the first question. Kate, can you tell me the story of how you got into secondary metabolites? Kate Duncan: So I … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … fungi by James et al. and Sekimoto et al . In both studies, however, Olpidium was unexpectedly grouped with … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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