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The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and … Group supports our Microbial as well as Metagenome Science Programs …

… student. Aflatoxin, of course, is a fungal natural product which is a liver toxin when humans accidentally eat it, … felt kind of like training for a marathon by running at a high altitude! And a lot of us moved on to work in simpler … can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have …

See below for examples of successful Letters of Intent to our Community Science Program … submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User … … Characterization of simplified soil communities with high and low carbon use efficiency across differing moisture …

The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … … Beyond providing a scalable solution for production of high-quality fungal reference genomes, this program is an … DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The …

The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence … around 280 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at … team science and collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the …

… scientific discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE … jointly support these missions, and to expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in …

The CSP Functional Genomics call is to enable users to perform state-of-the-art … function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics capabilities to enhance … design, please contact Tanja Woyke, Deputy for User Programs. Technical and Scientific Leads will also be …

… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … collection and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality control …

The JGI Project Management Office carries out a number of … PMO Team         Christa Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager Tijana Glavina …

… chromosomes for bioenergy, nutrient cycling and bioproduct applications.  The team has three subgroups: Synthetic … assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate … maintain software that support the JGI’s Synthetic Biology Program.    Representative software includes: … Plus: …

… of these compounds, which, in turn, translate into a high chemical diversity. So that’s just the type of … systems. So, in those cases, it’s been, in the last five years, obvious that these are specialized metabolites. … thing. Another way to approach it is more related to what JGI does, which is sequence genomes. And we just published …

The central mission of the JGI’s Genomic Technologies department is   ensuring users … Metabolomics. Strong internal collaborations with  Science Programs and  Operations enable the JGI to focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation, …