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… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … this identification, metabolomics enables functional genome annotation, improves understanding of the role small … JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using …

… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … cycling, biodegradation and biogeochemistry. This research helps translate their genomic potential into practical …

Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. …

The IMG group owns and maintains integral components of JGI’s production workflow, … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … species specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control …

Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  … the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. …

A deep dive into microbial genomics reveals one bacterial species is … to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how can SAR324 … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, …

… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … to free up their nutrients; mycorrhizal symbionts shuttle water and nutrients to trees; plant pathogens colonize …

… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology … box of protective tricks. Nature Reviews Microbiology 20 (5), 255-255 Schulz et al. (2020) Giant virus diversity and …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … Program Product Description Deliverables Cycle Time FY25 Q1  (median/75th percentile*) DNA Synthesis Constructs … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …

… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … and the environment. At its core, the program investigates photosynthesis — the process that transforms solar energy … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is …

… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Hear more from Ben Cole and Margot Bezrutczyk in a  recent episode of the Genome Insider podcast. All together, these data offer a granular …

Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle nutrients and …