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Support Analysis group provides computational analysis for new technology development and JGI user science projects. We … transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … better understand the plant-associated terrestrial world. Research Team    … Plant microbiomes hold the amazing … simiae WCS417. One suggested function of these phage genes is the modulation of their bacterial host to colonize …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is … species specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control …

… analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database … and conduct comparative and genome-centric analyses of algae, while also encouraging community engagement and data …

… empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. … selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist …

Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet … functional assay lets us move beyond cataloging the genes of microorganisms and start making quantitative …

… the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned into … annotation for ( Phytozome for plant, Phycocosm for algae) depends on genome Plant and Algal Resequencing SNP …

… as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … to improve automated assembly pipelines bringing in new technologies, in particular through adoption of lab … on developing methods for converting digital information from sequence databases into biotechnological or …

… of both plant and animal cells, it shares nearly 7,000 genes with other organisms (a third of those shared by both … sort of genomic hackathon to annotate a genome. (Hear more from on Chlamy from Sabeeha Merchant in this episode of … of arctic-growing Chlamy. Merchant continues to work on the tiny alga with a mighty impact. Her lab has sequenced four …

… into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, … Group : a research & development group and focused on new technologies and optimizing tools — including strain … platform enables users to validate hypotheses generated from mining genomic data by designing and assembling …

… by Science Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for … Mycocosm (citation: https://doi.org/10.1093/nar/gkt1183 ) Algae: Phycocosm (citation: … the User Agreement? … How do I obtain a JGI login? … I have new contact information. How can I update my JGI account? … …

… we have our conversation with Professor Alison Narayan, from the University of Michigan. I hope she’ll accept this … that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh Alison … to test that hypothesis through site-directed mutagenesis, we would end up with dead enzymes. So often, when …