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Plant-Microbial Interactions Group
… associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … strains, whereby they can modulate host metabolism, gene expression and phenotype. We have recently identified …
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Natural Prodcast Episode 18: A CSP Primer
… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the … I think for Natural Prodcast, I think the question that generally comes up that people come to me asking like is– …
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Examples: Successful LOIs & Submissions
Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, … calls. These documents have been shared with permission from the PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated …
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JGI Portals
… resource for the broader scientific community and require constant developments to meet the ever-changing demands of … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database …
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Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation
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Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli
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University of California, Merced Internship Program
Originally conceived as a UC Merced graduate student summer research … experience at the JGI, the Genomics Internship Program soon expanded to include undergraduate students. To date, more than 80 UC …
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How To Use Our Systems
… … Information on Software Looking for information on our software, including BBTools ? Click to find that on our archive site.  …
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Alabama Agricultural & Mechanical University Internship Program
… and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their scientific skills and collaborating with their mentors and fellow interns. Inspired by the success of the UC …
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The quantitative genetics of gene expression in Mimulus guttatus
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Natural Prodcast Episode 3: The Primer, Part 3
… maybe it’s a new culture of a new bacteria that you pulled from the soil, maybe it’s, you know, we talked about … and actually get to the DNA sequence – sequences for the genes that code for the proteins that produce secondary … if we can improve technology, for assembly and cloning and expression, we should be able to actually make the chemical …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of … first paper that describes sorghum’s response to drought, from a large-scale field experiment to uncover the … Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, Pacific Northwest National Laboratory, …
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