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Bacteria and Fungi Divvy Up the Work in Forest Floor
… teems beneath your feet. Both bacteria and fungi have genes that can break down plant fibers. But are they both … (transcriptomes) from their soil samples. This gene expression dataset was particularly important for … ignoring these difficult potential foodstuffs. The team’s findings also illustrate what’s happening on a spatial …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… warm, arid environments. Corn and sugarcane are among the major high-yield C4 crops, as are the candidate biofuel … at Lawrence Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet … to turn a C3 crop into a C4 crop. There should be a master regulator but no one has found it,” Kellogg mused. “[The S. …
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DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor
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Combinatorial Regulation of Endothelial Gene Expression by Ets and Forkhead Transcription Factors
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Metagenome Program
… along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom interfaces and … We leverage  genome-resolved metagenomics and targeted gene searches to expand representation of uncultivated …
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High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi
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Two major chromosome evolution events with unrivaled conserved gene content in pomegranate
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How To Use Our Systems
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can …
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RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex … Swift — verified that the fungi expressed biosynthetic gene clusters, which are “building blocks” of natural … products. The team then confirmed that these expressed genes translated into expected proteins. That work was done …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… RNA viruses in large data sets, their work may be akin to finding a single snowflake on a colored-in page of that … than 5,000 data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the … RNA genome replication, detecting it has been a challenge. Finding the RNA virus snowflakes in the snowstorm of genomic …
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