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Partnerships Development Team
… was established in part to help better-connect industry to JGI resources, as well as target academic, governmental and … institutions who haven't yet partnered with the JGI. The Business Development Team works closely with the … to high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy …
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DOE Metrics
… hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … 123.993 175% 2,164 1,656 76.5% ††† † Operational Goal = 89 days; Actual Operation = 76 days due to shelter in place order. †† Operation Goal = 91 …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit … and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore … ported to the GPU architecture. A GPU hackathon is a five-day coding event that offers participating teams the …
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Frequently Asked Questions: Project Management
… products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal submission, as well as …
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Homoeolog expression divergence contributes to time of day changes in transcriptomic and glucosinolate responses to prolonged water limitation in Brassica napus
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building … to clean out the building.  We don’t want to just throw everything into the landfill, we need to be able to divert …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted … proposals are NOT eligible for BERSS support through the JGI (with the exception of DE-FOA-0003453, which is eligible for BERSS). Available Resources All JGI products are available through BERSS. Learn more about …
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Environmental Genomics Group
… . Research Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. … Clum, A. et al. (2021)  DOE JGI metagenome workflow … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. …
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Uncovering Novel Genomes from Earth’s Microbiomes
… have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to climate change. “With this dataset I can see where every microbe is found, and how abundant it is. That’s very …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… in cooperation to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … mapping these RNA reads. “Currently, this is the largest JGI-sequenced fungal metatranscriptome yet,” said Igor …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the … to all sequence and annotation data and their comments. … JGI researcher Dan Udwary hosts this “fireside chat”-style … the science and scientists of secondary metabolism. As the JGI acts on its goals in — and builds out its capabilities …
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