Search

Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … While most organism’s genetic information is encoded in DNA, with RNA delivering the instructions inside DNA to the …

… state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … we recognize and sticking another piece in, that usually doesn’t work, or if it does work, it doesn’t work as well, … we’ve already sequenced. So, you know, I’ve got a large database of millions of different biosynthetic gene …

… you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy … bit of entomology as well. DAN: Right. Yeah. No, yeah, Bill does it all. A lot of people I think-- well, maybe I'm … them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or …

… you can always find at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more to talk about there, and I’ll … BACHMANN: Everything starts with genome mining. And a great database. DAN UDWARY: All right, awesome. So you have a …

… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … countries (Iran, North Korea, Cuba, and Syria), need DOE permission and authorization from other U.S. government … data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, depending on the …

I didn’t know how to get towards that.  Organic chemistry doesn’t really help with getting to something other than the … local environments, and so they don’t transfer a lot of DNA back and forth, especially across species. And so then … do when you’re exploring your systems. Because I think the JGI has a little bit of a different approach. We don’t …

This summer, the DOE JGI hosted 10 interns who came from a wide range of … Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with Matt Blow; Sean …

The JGI’s Metabolomics Program works to uncover the roles of … in living systems, particularly as they relate to DOE missions in the bioeconomy, sustainability, and … .   … In support of user science, the JGI Metabolomics Platform delivers rich metabolite profiles from diverse …

… has been really, really fun. Alison Takemura: And then does that also– well, I guess the question really is, do … gene clusters of those.And they’re just like nothing in databases that currently exist. We looked at chemistry, so … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …

… the Arizona Genomics Institute where high molecular weight DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … KBase integrates a variety of data and analysis tools, from DOE and public resources, into an easy-to-use platform that …

… genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … Clum, A. et al. (2021)  DOE JGI metagenome workflow …

… think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … What is beautiful for natural products is nature! Nature does this sort of – if you think of nature as a scientist, … so everybody, readers of the library, can come to our databases and look for the specific information they are …