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User Advisory Committees
… and operational objectives. Serving as JGI’s principal external advisory body, the JAC includes representatives from all specialized JGI advisory and executive committees. … The DNA Synthesis Science Advisory Committee is chartered to … the program. The committee serves as the program's key external advisory panel and advocate of the program's strategy, …
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Metabolomics
… JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … molecular profiles are generated for metabolites extracted from a variety of experimental samples, including organisms … they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… you’ll be hearing about microbiology and natural products from the Great Salt Lake, and you’re going to learn, like … or whatever you’d like, whatever D– you can submit any DNA sequence really, and it will go through SMC’s pipeline. … have just over a million BGC– or sorry, just over a million DNA sources. And so a “source” is some source of DNA. It …
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Frequently Asked Questions: Project Management
… Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith Metabolomics … The majority of JGI projects come from the user community. Find out about JGI’s calls for … the JGI User Agreement will be an authorized representative from your institution (usually a legal counsel …
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Micro-Scale Applications Group
… group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our … Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to accurately measure … The JGI provides users access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the …
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Natural Prodcast Episode 23: Aaron Puri
… conversation with Aaron Puri. He is an Assistant Professor from the Chemistry department at the University of Utah, so … of their synthases so that we can start to use the DNA sequence to predict or just understand better the … is alive and well and doing very well. She’s a real journalist now. Just not working with me. AARON PURI: No, it’s …
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Offerings & Capabilities
… science by generating data in three overarching categories: DNA Sequencing , Biodesign and Metabolomics .  Many users …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… research community able to not just analyze but also create DNA sequences mimicking an array of microbial life. By leveraging massive user-generated datasets at the JGI and other publicly available data, … machines. It has been applied in a variety of industries, from the health care to the financial sector — whether to …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… cycles. Francis Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao Ma. And Karen Serrano and Benjamin …
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Natural Prodcast Episode 1: The Primer, Part 1
… Laboratory. Being a User Facility means that scientists from all over the world bring us big problems related to … – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic … is a chemical compound called geosmin that’s produced by soil bacteria that live all over the place. So that smell of …
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Marine Microbe Contains Multitudes
… But SAR324 can be found throughout the water column, from the warm, well-lit surface, to the blue-lit twilight … (HOT), they collected samples of the ocean’s microbial communities periodically at different depths. In order to … the sequence of a “marker gene,” namely the 16S ribosomal RNA (rRNA) gene, to mark or identify microbial species. All …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … as part of our data analysis plan mapping of short-reads datasets (metagenome or metatranscriptome) to a relevant … metagenome assembly. Integration of this type of “external mapping” into IMG is currently being revamped but we …
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