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Leveraging single-cell genomics to expand the fungal tree of life
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Diversity of cytosine methylation across the fungal tree of life
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … fragments from the ecosystems. Selecting a protein identified from their studied system results in seeing their …
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THE Bioenergy Tree
… The US Department of Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern Hemisphere, making them tantalizing …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … challenges in the sourcing, recovery, and utilization of critical minerals and materials. The proposal submission … Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. …
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Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … an extensive internal product audit to analyze the scientific value, demand, and costs of current offerings in the … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … into natural products by starting out in synthesis and then discovering more-- [LAUGHS] I don't know, practical or …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … all major evolutionary lineages in the land plant tree of life.   As of the start of 2022, there were 120 principal … Filling in the Plant Tree of Life …
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The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… conditions. The Science Through a combination of sequencing tools and techniques applied to samples collected from acidic iron-oxide microbial mats in Yellowstone National Park over time, … furnish greater definition of the roots of the tree of life on Earth, and their broad distribution suggests …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … become your parent anymore, but has this other role in your life. A colleague, ya know, a teacher in many ways. And so … and did some meta-T [meta-transcriptomics] on that and identified just a small subset of transcripts up-regulated …
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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
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