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Leveraging single-cell genomics to expand the fungal tree of life
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THE Bioenergy Tree
The US Department of Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern Hemisphere, making them tantalizing …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a … all major evolutionary lineages in the land plant tree of life.   As of the start of 2022, there were 120 principal …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … into natural products by starting out in synthesis and then discovering more-- [LAUGHS] I don't know, practical or …
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The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
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Products
Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … an extensive internal product audit to analyze the scientific value, demand, and costs of current offerings in the … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … become your parent anymore, but has this other role in your life. A colleague, ya know, a teacher in many ways. And so … and did some meta-T [meta-transcriptomics] on that and identified just a small subset of transcripts up-regulated …
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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
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Multisubstrate specificity shaped the complex evolution of the aminotransferase family across the tree of life.
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CSP Large Scale Call
… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, … All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data usage by …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of …
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DOE Metrics
… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. … computational method for improving the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] …
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