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Integrating Experimentation with Data
Automated Laboratories: Integrating Experimentation with Data.” The event will take place at the Seattle Marriott … and synthetic biology AI/ML-enabled laboratory automation, data integration and modeling This three-day joint user … systems using advanced experimental and informatic tools at no cost. The JGI and EMSL are supported by the …
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE repository . Not all …
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Frequently Asked Questions: Project Management
… then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in … The Project Overview report includes project-level metadata such as the project name, current status, NCBI & JGI …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … often end up realizing that what is defined by the KEGG [database], for example, is not enough even there. So it’s … I have the feeling that once we have the synthetic biology tools, we finally are in a position to exploit secondary …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Natural Prodcast Episode 20: Brian Bachmann
… a postdoc and went to industry to see what they had, what data they had. DAN UDWARY: And they had a lot of data for the time, right? BRIAN BACHMANN: For the time. … an undergraduate and not succeeding and still using all the tools from mechanistic enzymology to natural product …
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Genomes OnLine Database (GOLD) v.8: overview and updates
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Natural Prodcast Episode 17: Cassandra Quave
… early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy … when I was doing my dissertation research, I gather data from all over this area of Southern Italy and in … get a DNA sequence first. And there are plenty of software tools to find natural product gene clusters, and even be …
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Genomes OnLine database (GOLD) v.7: updates and new features
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Natural Prodcast Episode 8: Eric Schmidt
… learn how to make peptides, rationally. We’d find these tools, we’d understand them, and we’d apply them. And so, I … proteins interact with each other. There’s a lot of leading data from excellent groups about specific interaction …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… sites designed to collect long-term open access ecological data to better understand how U.S. ecosystems are changing.  … program. Q: For a NEON Assignable Assets project, does the data produced become public as well? A:  Currently NEON doesn’t have a method for hosting that data. NEON recommends you host your data elsewhere. However, …
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Natural Prodcast Episode 14: Nigel Mouncey
… using these together along with all of our computational tools to really build out much more of an integrative … my dream is that I don’t think there’ll ever be a sort of golden host that might be able to express everything that we … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …
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