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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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JGI Portals
Our data platforms are a key resource for the broader scientific … developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes … unified access to all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI …
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Natural Prodcast Episode 11: Marnix Medema
… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … there is many. I would say, perhaps, half of or more of the users of antiSMASH are not in this field either. So they …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of the …
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Natural Prodcast Episode 24: Jackie Winter and SMC
SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … of always working on natural products but just different tools and how to really access and manipulate these pathways … You can interview me, and otherwise, I’m just going to babble. [CHUCKLES] JACLYN WINTER: Yeah, I guess– how do you …
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Strain Engineering
… yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional … The developed strains represent an additional phase of user-accessible project types, in which DNA-based molecules …
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Natural Prodcast Episode 12: Nadine Ziemert
… much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … to talk to us way back, when there was going to be a JGI user meeting. That didn’t quite happen, this year. But do … more into the meta genome mining. We started to build the tools for natural product researchers that easily can …
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Frequently Asked Questions: Project Management
Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , … then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in …
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Natural Prodcast Episode 16: Marcy Balunas
… exposed to sun. And the bacteria that we collected– so the guides that we took with us had this huge pick and one of … massive problems just as much as it brings about massive data into really interesting ways to look at our systems. … of Energy Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National Lab. You …
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Natural Prodcast Episode 14: Nigel Mouncey
… had in my group which was bioengineering bio-process R&D, BBRD, a group of about 75 people. So our biggest project was … using these together along with all of our computational tools to really build out much more of an integrative … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …
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Natural Prodcast Episode 6: Marc Chevrette
… pathways. So that’s kind of how I fell down the rabbit hole. I was curious about what they were, what they … and I’m really excited about it. Because now we have the tools through genomics, and metabolomics, to ask these … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …
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A Bioinformatician's Guide to Metagenomics
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