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Occurrence and expression of genes encoding methyl-compound production in rumen bacteria
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Comparative Genomics of Rumen Butyrivibrio spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities
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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
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Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study
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DNA Synthesis Program
Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the development of biofuels, biochemicals and other … missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 fixation, redox …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . … 8(1):1424. Sczyrba A, et al. (2017) Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … feedstock for biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot …
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Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome
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Natural Prodcast Episode 18: A CSP Primer
UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. … we also have a lot of analysis pipelines, be it for, again, metagenome, metatranscriptomes for SNP analysis if somebody …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … I’m definitely seeing why this is such an important area to study. Okay, what’s your third story?  DAN: The third story … ALISON: Hmm, yeah, I guess this relates to when I was studying heterotrophic bacteria: the core genome and the …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me keeping myself on my self-imposed schedule. So, we’ll have to … was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand …
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