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Sequencing Technologies & Products
… profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a … DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling …
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Improving the Cacao Genome and Phytozome
… Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … the  HudsonAlpha Institute for Biotechnology . An updated reference genome for  T. cacao has now been completed and …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality genome and now crop researchers can work toward advancing … accounts for 80% of sugar production worldwide, but has one of the most complex genetic blueprints. Assembling a … conducted by the USA Department of Energy (DOE) Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium.
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Project Management Office
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The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum
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Partnerships: Myco-Ed
… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … a scalable solution for production of high-quality fungal reference genomes, this program is an important initiative …
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John Vogel
… genomic resources that fostered the widespread adoption of Brachypodium distachyon as an experimental model for the … techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … the evolutionary and practical significance of plant pan-genomes including understanding polyploid genome evolution …
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Microbiome Data Science Team
… in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex … Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple … For the portion of the work conducted by the Joint Genome Institute and the Joint BioEnergy Institute, support …
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Green Algae Reveal One mRNA Encodes Many Proteins
… zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … Laboratory, the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … 600 green millet plants and released a very high quality reference S. viridis genome sequence. Analysis of these … a senior author of the paper. “This paper is the first one to survey a huge amount of natural diversity and say, …
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