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A Plant Root Atlas for Tracking Developmental Trajectories
… the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types in the plant root atlas, and noted that the approach he developed … Plant Single-Cell Solutions for Energy and the Environment …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute … data. Sarah:  How important is collaboration in the big data and plant science community? Avinash: Having … Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …
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Natural Prodcast Episode 3: The Primer, Part 3
… wasn’t necessarily cutting it. They had this you know, big curve of lots of new molecules being discovered lots of … for a long time by many, many bacteria – and fungi and plants. And so that’s the power and the promise of, I guess, … we can find more things. Turns out some of the early genomes that were sequenced for, say, Streptomyces – they …
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CSP Functional Genomics
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on … concern as extreme weather events become more frequent. “A big part of the Danforth Center’s mission is to feed the …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … also known as “polyploidy,” is common among flowering plants; at least once during their evolution, the genomes of …
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Natural Prodcast Episode 22: Alison Narayan
… just from as a simple organic chemist, can I make that big, beautiful molecule? And so I’d like to think I’ve … really just learn so much, which then enables you to ask bigger questions and accomplish bigger, lofty goals. JACKIE WINTER: I think that– yeah …
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Offerings & Capabilities
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Sequencing Technologies & Products
… profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a … DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling …
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Jeremy Schmutz
… eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant cellulosic …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated …
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