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Natural Prodcast Episode 12: Nadine Ziemert
UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … episode 12 of Natural Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in … wrong data, wrong names with things. I think it could be better. That is a challenge.  And otherwise, I don’t know. I …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership … that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then …
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Mission
Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … went on to advance basic science by sequencing scores of microbial species as well as several model organisms and … Integrative Genomics Building (IGB), a home it shares with the staff of the DOE Systems Biology Knowledgebase …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … we’re going to be presenting some conversations we had with scientists in the field of natural products. So, it’s a … think there are avenues now to understand that a little bit better, with some advances in evolution and cell biology. …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … some areas where chemical synthesis is actually-- might be better, especially in really low-yielding products. We're …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … lucky to get some time to sit down and have a great chat with him.  I kind of lost count of how many times Brad used … are going to happen, that become toxic, and be able to better, perhaps, inform the public when a toxic event is …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, … technologies have led to an abundance of microbial genomes becoming available to the global research … Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out …
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Examples: Successful LOIs & Submissions
… for User Science calls. These documents have been shared with permission from the PIs who drafted them.  … … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during … crops … Characterization of simplified soil communities with high and low carbon use efficiency across differing …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … drug discovery train moving, drug companies started working with some techniques referred to as “combinatorial … how these systems evolve. ALISON: And we want to be able to better understand how these particular secondary metabolites …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and … order by the reviewers. The ranked proposal list, along with a recommendation from management at JGI and the other …
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of …
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