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Help from Citrus’ Bitter, Hardier Cousin
… never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  Citrus genus, which gives us lemons, … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
Learn more
Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These … State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these genomes.  …
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MycoCosm Tutorial
… tools for comparative genomics and community annotation. Presented by Igor Grigoriev, Steven Mondo, Steven Ahrendt and Sajeet Haridas. …
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A Powerful Technique to Study Microbes, Now Easier
… Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process …
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Tracking the Origins of Methane-Producing Microbes
… Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… For years, extracting single cells and then amplifying their DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called … Primary Template-Directed Amplification (PTA) yields a much higher completion, above 80% in most cases. The Impact …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … global carbon cycle, and are of significant interest for their potential contributions to a sustainable bioeconomy, … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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How Filamentous Fungi Sense Food
… of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … which then can be explored in depth for multiple models and their close relatives across the fungal tree of life, … Service Award Trainee Grant 5T32GM007127-39. The work conducted by the US Department of Energy (DOE) Joint Genome …
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Expanding Virophage Diversity
… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … 89 contigs were considered to be complete genomes, and their discovery has extended the possible virophage genome …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… To boost crops more efficiently in the future, the evolutionary past may hold key insights. The way that plants … leaving potential targets for crop engineering untouched. Research recently published in  The Proceedings of … 25, and eukaryotes having slightly larger numbers due to their expanded metabolisms. These ATs can operate in a …
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Virus-Microbe Interactions of Mud Island Mangroves
… University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate … awards graduate students the opportunity to pursue part of their thesis research at one of the DOE national …
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Crops as Tough as World Cup Turf
… need corn, sorghum and other crops to grow well in worse conditions: with more heat, less water and less fertilizer. Grasses do better in these conditions, so plant biologists James Schable, Guangchao Sun …
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