Results

High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and … in both the energy and health sectors. Mammalian Functional Genomics Lab VISTA Enhancers VISTA Cardiac Enhancer Browser … NLM Board of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome …
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Yasuo Yoshikuni
… sugar polymers in macroalgae and developing the first microbial platform technologies unlocking the potential of … to low pH in multiple Issatchenkia orientalis strains., Microbial Spectrum , 2024 Wu et al.Metabolic engineering of … of citramalate., Metabolic Engineering Communications , 2023 Wu et al. Structural characterization of a soil viral …
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Sequencing Technologies
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… the microbes there,” said Simon Roux , the Viral Genomics Group Lead at the JGI.  To understand the … because they often need unique conditions and a specific microbial host to replicate. Sequencing genetic material … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance
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Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phages
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CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea
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Crysten Blaby-Haas
… working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging … Postdoctoral Award for Research Excellence, 2015 34th Annual Women’s Recognition Award for Science, 2020 NIH … AT, Blaby-Haas CE. (2024) Machine learning sheds light on microbial dark proteins. Nature Rev Micro 22, 63. Davidi L, …
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