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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … of years of evolution, suggesting it plays an important functional role in regulating gene expression. Focusing on … for bioproducts and ecosystem resilience.  Aligned with DOE Biological and Environmental Research program goals, this …
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Comparative transcriptomics of CAZy enzymes in white- and brown-rot agaricomycetes: Evolutionary insights into lignocellulose degradation and the relevance of GH16 glycoside hydrolase functional divergence
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Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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Introducing New Members of the JGI User Executive Committee
… “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here … in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large parts … exist on [the JGI data portal] IMG or how to deal with situations in which they inadvertently analyzed …
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User Executive Committee Charter
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that … community and promotes communication and collaboration within the user community. UEC responsibilities include: … to Chair, and the Chair will become Past Chair. This structured progression establishes a multi-year leadership …
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Mapping the Earth’s Hidden Fungal Kingdom
… roughly half of all genes have completely unknown functions — like a vast library of books written in a … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … to provide the comprehensive, standardized infrastructure that makes such discoveries possible. The JGI's …
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Accelerating Metagenomics Discoveries with Deep Learning
… Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … included how to use deep learning to predict protein function (Héctor García Martin of Berkeley Lab’s Biological Systems and Engineering), to assign microbial …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the … to the Department of Energy (DOE) Office of Science’s Biological and Environmental Research program because it …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database … of IMG/VR to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Ray Turner Completes Last Tour of Lab Duty at JGI
… last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … Lab tenure, Ray kept the 50-year-old Walnut Creek functioning at a high level as JGI transitioned from the … segued to remarks by the leadership of the DOE Office of Biological and Environmental Research: Sharlene Weatherwax; …
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