Results

Help from Citrus’ Bitter, Hardier Cousin
… genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for … only bitter, intensely sour fruit. Yet this plant, native to China and now disseminated around the globe, often as a rootstock for  Citrus , appeals in other ways. It better …
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Scaling Up Existing Skill Sets
… in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … and helped me consider working for a Department of Energy site after graduate school. Furthermore, my mentor Ben Cole …
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules were filled with … Genetic Elements and CRISPR Spacers in the Conifer Needle Microbiome Carlos Vazquez and mentor Bryce Foster, …
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Katherine Louie
… nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays). Scientific Reports. 2021. … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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Trent Northen
Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  … Zengler K et al . EcoFAB: Advancing microbiome science through standardized fabricated … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
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From Competition to Cooperation
… lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done … generated by the JGI more than a decade ago. Having these datasets will assist researchers in moving toward functional …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… featured speakers who shared a look back at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. … one second. “It isn’t just the generation of vast troves of data, it’s the new areas of scientific possibility that …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect … Capability DAP-seq allows researchers to identify all the sites where transcription factors bind quickly and … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent …
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