Results

A bloom of a single bacterium shapes the microbiome during outdoor diatom cultivation collapse
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Conserved environmental adaptations of stream microbiomes in the hyporheic zone across North America
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Animal-associated jumbo phages as widespread and active modulators of gut microbiome ecology and metabolism
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) … more density fractions. It also limits the potential for human error that might compromise samples. In addition, …
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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Matt Blow
… Genome Assembly, QA/QC, and User Support Analysis teams. Together, these teams provide analysis support and R&D for … and experimental approaches to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than … trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of DNA … They may also provide a basic understanding of the roles microbiomes play in determining the behavior of the physical …
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Probing specificities of alcohol acyltransferases for designer ester biosynthesis with a high‐throughput microbial screening platform
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EnZymClass: Substrate specificity prediction tool of plant acyl-ACP thioesterases based on ensemble learning
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2022 Progress Report
… the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …
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