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IMG/M: the integrated metagenome data management and comparative analysis system
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving … addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … Blow, and their team have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have … and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … share. The end result was a list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new to the …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo …
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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to … The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … program (LDRD) entitled ‘Tackling microbial-mediated plant carbon decomposition using “function-driven” genomics’. …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of … Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from … Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several …
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Forming Scientific Connections and Building Community
… pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … Being able to work with state of the art technology and greenhouses/grow chambers has been an incredible experience. …
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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