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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast …
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic elements like … and metatranscriptomes. To lower barriers to accessing and using geNomad, the JGI partnered with the NMDC to integrate … to P.N.N.L.), and used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative …
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A Plantiful Future: Xiaohan Yang
Can plants help humans attain a renewable energy future? Can they help lock away more … Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… its DNA Synthesis Science Program , the JGI enables large-scale synthesis support, sequencing, integrative -omics, and … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … Transcriptional control of  Clostridium autoethanogenum  using CRISPRi ). Now, they’ll be able to further explore how …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends … in Mono County, California, scientists have used sequencing methods for the first time to comprehensively characterize …
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Microbial Community Structure and Functional Potential Along a Hypersaline Gradient
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional annotation, …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … or wouldn't,” said Rex Malmstrom, leader of the Microscale Applications group at the JGI, whose team uses a …
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal … lab had previously collaborated with the JGI on a proposal using this approach through the Emerging Technologies …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric … gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … from different phyla are capable of methanogenesis. Using metagenomics eliminates confirmation bias, because it …
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