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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the … how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In … of Cell Identity as an R package … Education … Selected Publications … Software …
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Uri Neri
Uri Neri is a computational biologist who spends his days wrangling … remembering to document his code. At JGI, he develops tools for viral discovery and analysis, with a particular fondness … "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our …
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Microbial secondary metabolites: advancements to accelerate discovery towards application
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Protocol for condition-dependent metabolite yield prediction using the TRIMER pipeline
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Morphology-Driven Control of Metabolite Selectivity Using Nanostructure-Initiator Mass Spectrometry
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in …
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with … using natural language processing techniques to categorize genetic information. Learn more about their work here in a series of …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is … hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … B25J-1604: Eoin Brodie, Berkeley Lab: “Uncovering microbial metabolic trajectories during the snowmelt period in …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can …
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the … analyses at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, … underrepresented minorities in science, technology, engineering and math (STEM) fields. This summer, they worked …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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