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The Switchgrass Genome: Tools and Strategies
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Doubling Down on Known Protein Families
… through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … sequences evaded classification. Researchers also tried to hone in on the function of the genes via 3D modeling, and …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often … look at how this enzyme family evolved across 90 species. “One unique thing about this work was our focus on all the … of these enzymes across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … ASM Microbe Meeting in Los Angeles, Calif.  Roux is also one of the lead organizers of the Viral EcoGenomics & … microbes and influence how soil ecosystems function. He was one of the eight JGI researchers on the 2023 Highly Cited …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… . Research shows that flagella were lost in other forms of  Chloroflexota that adapted to marine environments … bacteria have enzymes to synthesize or degrade plant hormones, meaning its land-dwelling counterparts could have the … out at Lawrence Livermore National Laboratory (LLNL) was done under Contract DE-AC52-07NA2734. Funding for this …
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JGI Workshop at SIMB NP Meeting
… often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters … a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from … that address these issues. Check the scientific program for relevant posters. …
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Genome Sequence of Thermofilum pendens Reveals an Exceptional Loss of Biosynthetic Pathways without Genome Reduction▿ †
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Worldwide Population Genomics Reveal Long-Term Stability of the Mitochondrial Genome Architecture in a Keystone Marine Plant
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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