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DNA Methylation in Ensifer Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with Medicago spp.
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Novel Viral DNA Polymerases From Metagenomes Suggest Genomic Sources of Strand-Displacing Biochemical Phenotypes
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Diversity and Distribution of a Novel Genus of Hyperthermophilic Aquificae Viruses Encoding a Proof-Reading Family-A DNA Polymerase
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Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)
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Exploring Proteomes of Robust Yarrowia lipolytica Isolates Cultivated in Biomass Hydrolysate Reveals Key Processes Impacting Mixed Sugar Utilization, Lipid Accumulation, and Degradation
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… along with its life cycle. For most bacteria, their DNA floats freely within the cytoplasm of their cells. This newly discovered species of bacteria keeps its DNA more … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Baldrian of the Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … Science (FICUS; #49499) program and used resources at the DOE Joint Genome Institute and the Environmental Molecular …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … directed finishing and co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the … community driven science for JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. He provides scientific …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal … then used a series of random insertions of a foreign DNA sequence to generate a huge pool of mutants, each containing … by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the …
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
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Open Frameworks Training the Next Generation of Scientists
… KBase is a knowledge creation and discovery environment designed for reproducible computational biology … fungal genomes. They manually curate data to connect to the newly generated Myco-Ed reference genomes made available in … in parallel. While KBase does not currently have all the tools for complete processing and analysis of fungal data, …
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