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Game On: High School Students Drive Everglades Metagenomics Study
… of a spoonful of dirt with the question: Do you want to find out what is in this soil? Jonathan had been reaching … analysis.  The class had to sift through over 55 billion genes and 16 trillion DNA bases of data, to figure out what … this research project,” said Jonathan. “Students now have a deeper understanding of both the research process and …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
This team quantified the expression of over 12,000 fungal genes, in addition to associated plant genes.  Hear more from Ben Cole and Margot Bezrutczyk in a  … Serrano, Cole and their team found over 1,000 upregulated genes, 188 of which were shared with previous studies in the …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
This team quantified the expression of over 12,000 fungal genes, in addition to associated plant genes.  All together, these data offer a granular view of … Serrano, Cole and their team found over 1,000 upregulated genes, 188 of which were shared with previous studies in the …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental … terpenes, the JGI synthesized several of the underlying genes. These genes then provided a foundation that allowed the scientists …
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Novel Z-DNA binding domains in giant viruses.
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… contains about 6% of the human genome . They discovered genes linked to conditions such as cardiovascular disease, … about 2% of the human genome. They were interested in genes involved in repair of DNA damage, and those associated … 3% of the human genome. They wanted to learn about the genes implicated in the development of breast and prostate …
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Busting the Unbreakable Lignin
JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also … modification happening in the absence of oxygen. These findings offer the first real irrefutable proof that lignin … will require further research, including confirming the genes and the enzymes those genes produce. If confirmed, and …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… of his leadership here,” Nick said. “I’m not sure that it’s going to be possible to fill these shoes. It’s going to be a tough one, but I’ll do my best. I know I owe a …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Marianne Buscaglia
… in cold marine environments and is interested in analyzing genes that can impact the metabolism of their hosts. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… as well as a second field trial (which will include a drought treatment), we hope to understand this better. Q (re …
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